[LTER-im] MATLAB script inclusion?

[Mark Servilla]

Hi Everyone,

Thanks to some extra time that Duane put in last night, we've made John
Porter's code generation service available through PASTA's staging
environment (specifically, through portal-s.lternet.edu). Please let us
know if you have any questions/issues with this service. Thank you.

Sincerely,
Mark


---
Mark Servilla, Ph.D.

LTER Network Office
Department of Biology
MSC 03 2020
1 University of New Mexico
Albuquerque, NM 87131-0001

servilla at LTERnet.edu
(505) 750-3226

On Tue, Feb 23, 2016 at 12:02 PM, John Porter <jhp7e at eservices.virginia.edu>
wrote:

> I have set up a new web service at:
> http://www.vcrlter.virginia.edu/webservice/PASTAprog-S that operates the
> same way as the PASTAprog web service, but points to PASTA-S instead of
> PASTA....
>
> A sample URL is:
> http://www.vcrlter.virginia.edu/webservice/PASTAprog-S/knb-lter-fce.1188.3.r
>
> Enjoy!
>
>  -JP
>
>
> On 2/23/2016 1:18 PM, Mark Servilla wrote:
>
> Hi Brian,
>
> Apparently, the VCR service assumes the request originates from production
> PASTA. It would require a bit code change on either VCR's service end point
> or both VCR and PASTA services to make this process context sensitive. I
> cannot speak for John Porter, but our current situation does not provide
> for any new development in PASTA. Perhaps in 2-3 months the state of
> funding will change to allow this feature.
>
> On another note, please beware that we are not protecting data content in
> staging/development beyond the standard authorization ACLs in production --
> I was a bit concerned about your "embargo" text in your email.
>
> Sincerely,
> Mark
>
>
> ---
> Mark Servilla, Ph.D.
>
> LTER Network Office
> Department of Biology
> MSC 03 2020
> 1 University of New Mexico
> Albuquerque, NM 87131-0001
>
> servilla at LTERnet.edu
> (505) 750-3226
>
> On Tue, Feb 23, 2016 at 10:38 AM, Brian Herndon <bherndon at uga.edu> wrote:
>
>> Mark,
>>
>> Is there any way to have this code generated for datasets uploaded to the
>> portal-S?  When you try to download the codes an URL error is returned
>> because the metadata is not in the primary PASTA repository.  A feature
>> like this in portal-S would be helpful for researchers to have something to
>> work with on their embargoed data.
>>
>>
>>
>> *From:* im [mailto:im-bounces at lists.lternet.edu] *On Behalf Of *Mark
>> Servilla
>> *Sent:* Tuesday, February 23, 2016 12:19 PM
>> *To:* Jonathan Walsh < <walshjcaryinstitute at gmail.com>
>> walshjcaryinstitute at gmail.com>
>> *Cc:* IM committee < <im at lternet.edu>im at lternet.edu>
>> *Subject:* Re: [LTER-im] MATLAB script inclusion?
>>
>>
>>
>> Hi Jonathan,
>>
>> The "analyze with R, Matlab, SAS...' option automatically generates the
>> appropriate script (to the best of XSLTs ability) based on the EML metadata
>> for that specific data package, so including a separate script is not an
>> option. This process is executed on a server at VCR (the wonder of web
>> services), courtesy of John Porter, and with the help of the Workflow
>> Working Group. You may, however, include the script as part of the data
>> package and document the script within the EML as "software".
>>
>>
>>
>> I hope this helps.
>>
>>
>> Sincerely,
>> Mark
>>
>>
>>
>> ---
>> Mark Servilla
>> mark.servilla at gmail.com
>>
>>
>>
>> On Tue, Feb 23, 2016 at 9:54 AM, Jonathan Walsh <
>> <walshjcaryinstitute at gmail.com>walshjcaryinstitute at gmail.com> wrote:
>>
>> I see my data sets when viewed via the network portal have an analyze
>> with R, Matlab, SAS...' etc option.  Can I actually include the script we
>> use for this dataset?
>>
>> Thank you!
>>
>>
>> _______________________________________________
>> Long Term Ecological Research Network
>> im mailing list
>> im at lternet.edu
>>
>>
>>
>
>
>
> _______________________________________________
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>
>
>
> _______________________________________________
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> im at lternet.edu
>
>
>
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