[LTER-im] MATLAB script inclusion?

John Porter jhp7e at eservices.virginia.edu
Tue Feb 23 12:02:27 MST 2016


I have set up a new web service at:
http://www.vcrlter.virginia.edu/webservice/PASTAprog-S that operates the
same way as the PASTAprog web service, but points to PASTA-S instead of
PASTA....

A sample URL is:
http://www.vcrlter.virginia.edu/webservice/PASTAprog-S/knb-lter-fce.1188.3.r

Enjoy!

 -JP

On 2/23/2016 1:18 PM, Mark Servilla wrote:
> Hi Brian,
>
> Apparently, the VCR service assumes the request originates from
> production PASTA. It would require a bit code change on either VCR's
> service end point or both VCR and PASTA services to make this process
> context sensitive. I cannot speak for John Porter, but our current
> situation does not provide for any new development in PASTA. Perhaps
> in 2-3 months the state of funding will change to allow this feature.
>
> On another note, please beware that we are not protecting data content
> in staging/development beyond the standard authorization ACLs in
> production -- I was a bit concerned about your "embargo" text in your
> email.
>
> Sincerely,
> Mark
>
>
> ---
> Mark Servilla, Ph.D.
>
> LTER Network Office
> Department of Biology
> MSC 03 2020
> 1 University of New Mexico
> Albuquerque, NM 87131-0001
>
> servilla at LTERnet.edu
> (505) 750-3226 <tel:%28505%29%20750-3226>
>
> On Tue, Feb 23, 2016 at 10:38 AM, Brian Herndon <bherndon at uga.edu
> <mailto:bherndon at uga.edu>> wrote:
>
>     Mark,
>
>     Is there any way to have this code generated for datasets uploaded
>     to the portal-S?  When you try to download the codes an URL error
>     is returned because the metadata is not in the primary PASTA
>     repository.  A feature like this in portal-S would be helpful for
>     researchers to have something to work with on their embargoed data.
>
>      
>
>     *From:*im [mailto:im-bounces at lists.lternet.edu
>     <mailto:im-bounces at lists.lternet.edu>] *On Behalf Of *Mark Servilla
>     *Sent:* Tuesday, February 23, 2016 12:19 PM
>     *To:* Jonathan Walsh <walshjcaryinstitute at gmail.com
>     <mailto:walshjcaryinstitute at gmail.com>>
>     *Cc:* IM committee <im at lternet.edu <mailto:im at lternet.edu>>
>     *Subject:* Re: [LTER-im] MATLAB script inclusion?
>
>      
>
>     Hi Jonathan,
>
>     The "analyze with R, Matlab, SAS...' option automatically
>     generates the appropriate script (to the best of XSLTs ability)
>     based on the EML metadata for that specific data package, so
>     including a separate script is not an option. This process is
>     executed on a server at VCR (the wonder of web services), courtesy
>     of John Porter, and with the help of the Workflow Working Group.
>     You may, however, include the script as part of the data package
>     and document the script within the EML as "software".
>
>      
>
>     I hope this helps.
>
>
>     Sincerely,
>     Mark
>
>
>
>     ---
>     Mark Servilla
>     mark.servilla at gmail.com <mailto:mark.servilla at gmail.com>
>
>      
>
>     On Tue, Feb 23, 2016 at 9:54 AM, Jonathan Walsh
>     <walshjcaryinstitute at gmail.com
>     <mailto:walshjcaryinstitute at gmail.com>> wrote:
>
>         I see my data sets when viewed via the network portal have an
>         analyze with R, Matlab, SAS...' etc option.  Can I actually
>         include the script we use for this dataset?
>
>         Thank you!
>
>
>         _______________________________________________
>         Long Term Ecological Research Network
>         im mailing list
>         im at lternet.edu <mailto:im at lternet.edu>
>
>      
>
>
>
>
> _______________________________________________
> Long Term Ecological Research Network
> im mailing list
> im at lternet.edu
>

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