<div dir="ltr">Hi Everyone,<div><br></div><div>Thanks to some extra time that Duane put in last night, we've made John Porter's code generation service available through PASTA's staging environment (specifically, through <a href="http://portal-s.lternet.edu">portal-s.lternet.edu</a>). Please let us know if you have any questions/issues with this service. Thank you.</div><div><br>Sincerely,</div><div>Mark</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><br>---<br>Mark Servilla, Ph.D.<br><br>LTER Network Office<br>Department of Biology<br>MSC 03 2020<br>1 University of New Mexico<br>Albuquerque, NM 87131-0001<br><br>servilla@LTERnet.edu<br>(505) 750-3226</div></div>
<br><div class="gmail_quote">On Tue, Feb 23, 2016 at 12:02 PM, John Porter <span dir="ltr"><<a href="mailto:jhp7e@eservices.virginia.edu" target="_blank">jhp7e@eservices.virginia.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    I have set up a new web service at:
    <a href="http://www.vcrlter.virginia.edu/webservice/PASTAprog-S" target="_blank">http://www.vcrlter.virginia.edu/webservice/PASTAprog-S</a> that operates
    the same way as the PASTAprog web service, but points to PASTA-S
    instead of PASTA....<br>
    <br>
    A sample URL is:
<a href="http://www.vcrlter.virginia.edu/webservice/PASTAprog-S/knb-lter-fce.1188.3.r" target="_blank">http://www.vcrlter.virginia.edu/webservice/PASTAprog-S/knb-lter-fce.1188.3.r</a><br>
    <br>
    Enjoy!<span class="HOEnZb"><font color="#888888"><br>
    <br>
     -JP</font></span><div><div class="h5"><br>
    <br>
    <div>On 2/23/2016 1:18 PM, Mark Servilla
      wrote:<br>
    </div>
    <blockquote type="cite">
      
      <div dir="ltr">Hi Brian,
        <div><br>
        </div>
        <div>Apparently, the VCR service assumes the request originates
          from production PASTA. It would require a bit code change on
          either VCR's service end point or both VCR and PASTA services
          to make this process context sensitive. I cannot speak for
          John Porter, but our current situation does not provide for
          any new development in PASTA. Perhaps in 2-3 months the state
          of funding will change to allow this feature.</div>
        <div><br>
        </div>
        <div>On another note, please beware that we are not protecting
          data content in staging/development beyond the standard
          authorization ACLs in production -- I was a bit concerned
          about your "embargo" text in your email.</div>
        <div><br>
        </div>
        <div>Sincerely,<br>
          Mark</div>
        <div class="gmail_extra"><br clear="all">
          <div>
            <div><br>
              ---<br>
              Mark Servilla, Ph.D.<br>
              <br>
              LTER Network Office<br>
              Department of Biology<br>
              MSC 03 2020<br>
              1 University of New Mexico<br>
              Albuquerque, NM 87131-0001<br>
              <br>
              <a href="mailto:servilla@LTERnet.edu" target="_blank">servilla@LTERnet.edu</a><br>
              <a href="tel:%28505%29%20750-3226" value="+15057503226" target="_blank">(505) 750-3226</a></div>
          </div>
          <br>
          <div class="gmail_quote">On Tue, Feb 23, 2016 at 10:38 AM,
            Brian Herndon <span dir="ltr"><<a href="mailto:bherndon@uga.edu" target="_blank">bherndon@uga.edu</a>></span>
            wrote:<br>
            <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
              <div link="blue" vlink="purple" lang="EN-US">
                <div>
                  <p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Mark,</span></p>
                  <p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Is
                      there any way to have this code generated for
                      datasets uploaded to the portal-S?  When you try
                      to download the codes an URL error is returned
                      because the metadata is not in the primary PASTA
                      repository.  A feature like this in portal-S would
                      be helpful for researchers to have something to
                      work with on their embargoed data.</span></p>
                  <p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
                  <p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> im
                      [mailto:<a href="mailto:im-bounces@lists.lternet.edu" target="_blank">im-bounces@lists.lternet.edu</a>]
                      <b>On Behalf Of </b>Mark Servilla<br>
                      <b>Sent:</b> Tuesday, February 23, 2016 12:19 PM<br>
                      <b>To:</b> Jonathan Walsh <<a href="mailto:walshjcaryinstitute@gmail.com" target="_blank"></a><a href="mailto:walshjcaryinstitute@gmail.com" target="_blank">walshjcaryinstitute@gmail.com</a>><br>
                      <b>Cc:</b> IM committee <<a href="mailto:im@lternet.edu" target="_blank"></a><a href="mailto:im@lternet.edu" target="_blank">im@lternet.edu</a>><br>
                      <b>Subject:</b> Re: [LTER-im] MATLAB script
                      inclusion?</span></p>
                  <div>
                    <div>
                      <p class="MsoNormal"> </p>
                      <div>
                        <p class="MsoNormal">Hi Jonathan,<br>
                          <br>
                          The "analyze with R, Matlab, SAS...' option
                          automatically generates the appropriate script
                          (to the best of XSLTs ability) based on the
                          EML metadata for that specific data package,
                          so including a separate script is not an
                          option. This process is executed on a server
                          at VCR (the wonder of web services), courtesy
                          of John Porter, and with the help of the
                          Workflow Working Group. You may, however,
                          include the script as part of the data package
                          and document the script within the EML as
                          "software".</p>
                        <div>
                          <p class="MsoNormal"> </p>
                        </div>
                        <div>
                          <p class="MsoNormal">I hope this helps.</p>
                        </div>
                        <div>
                          <p class="MsoNormal"><br>
                            Sincerely,<br>
                            Mark</p>
                        </div>
                      </div>
                      <div>
                        <p class="MsoNormal"><br clear="all">
                        </p>
                        <div>
                          <div>
                            <p class="MsoNormal"><br>
                              ---<br>
                              Mark Servilla<br>
                              <a href="mailto:mark.servilla@gmail.com" target="_blank">mark.servilla@gmail.com</a></p>
                          </div>
                        </div>
                        <p class="MsoNormal"> </p>
                        <div>
                          <p class="MsoNormal">On Tue, Feb 23, 2016 at
                            9:54 AM, Jonathan Walsh <<a href="mailto:walshjcaryinstitute@gmail.com" target="_blank"></a><a href="mailto:walshjcaryinstitute@gmail.com" target="_blank">walshjcaryinstitute@gmail.com</a>>
                            wrote:</p>
                          <blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
                            <p>I see my data sets when viewed via the
                              network portal have an analyze with R,
                              Matlab, SAS...' etc option.  Can I
                              actually include the script we use for
                              this dataset?</p>
                            <p>Thank you!</p>
                            <p class="MsoNormal" style="margin-bottom:12.0pt"><br>
_______________________________________________<br>
                              Long Term Ecological Research Network<br>
                              im mailing list<br>
                              <a href="mailto:im@lternet.edu" target="_blank">im@lternet.edu</a><br>
                              <br>
                            </p>
                          </blockquote>
                        </div>
                        <p class="MsoNormal"> </p>
                      </div>
                    </div>
                  </div>
                </div>
              </div>
            </blockquote>
          </div>
          <br>
        </div>
      </div>
      <br>
      <fieldset></fieldset>
      <br>
      <pre>_______________________________________________
Long Term Ecological Research Network
im mailing list
<a href="mailto:im@lternet.edu" target="_blank">im@lternet.edu</a>

</pre>
    </blockquote>
    <br>
  </div></div></div>

<br>_______________________________________________<br>
Long Term Ecological Research Network<br>
im mailing list<br>
<a href="mailto:im@lternet.edu">im@lternet.edu</a><br>
<br>
<br></blockquote></div><br></div>