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I’m jebyrnes! Would love your you to add me!
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<div class="">On Feb 13, 2018, at 3:17 PM, Julien Brun <<a href="mailto:brun@nceas.ucsb.edu" class="">brun@nceas.ucsb.edu</a>> wrote:</div>
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<div dir="ltr" class=""><span id="inbox-inbox-docs-internal-guid-e4621598-90b8-2f60-69aa-7ece1838ef2e" class="">
<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Dear
all,</span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">We have
set up a repository on GitHub for your group to share and collaborate on scripts you are developing for your analysis:
</span><a href="https://github.com/lter/lterwg-bioprod" style="text-decoration-line:none" class=""><span style="font-family:Arial;color:rgb(17,85,204);background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;text-decoration-line:underline;vertical-align:baseline;white-space:pre-wrap" class="">https://github.com/lter/lterwg-bioprod</span></a><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">
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</span></div>
<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Everybody
can download the files. If you want to be able to upload scripts, you will have to send me your GitHub username and I can grant you write access. If you do not have an account yet, just sign up, it is free:
<a href="https://github.com/" class="">https://github.com/</a> </span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">We recommend
to use this system to share your scripts among participants and also to move them from a computer to another one. It is the best way to track changes and who made these the changes (including a younger you ;) ) and get back to any previous version of your
work. </span><span style="background-color:transparent;font-family:Arial;white-space:pre-wrap" class="">We do not recommend GitHub to manage your data, as git is best suited for small files.</span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">For those
of you who are not familiar with version control systems, in a nutshell, we need 2 tools:</span></div>
<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">-
</span><font face="Arial" class=""><span style="white-space:pre-wrap" class="">git: the software that tracks changes on specific files on your computer</span></font></div>
<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;white-space:pre-wrap" class="">- GitHub: the web platform that enables you to share these scripts</span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;white-space:pre-wrap" class="">Here is a tutorial to get started:
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="text-decoration-line:underline;font-family:Arial;color:rgb(17,85,204);background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class=""><a href="https://nceas.github.io/sasap-training/materials/reproducible-analysis-in-r/version-control-with-git-and-github.html#advanced-topics" class="">https://nceas.github.io/sasap-training/materials/reproducible-analysis-in-r/version-control-with-git-and-github.html#advanced-topics</a></span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Note:
Windows users, you will have to first install git software on your computer: </span>
<a href="https://git-scm.com/download/win" style="text-decoration-line:none" class=""><span style="font-family:Arial;color:rgb(17,85,204);background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;text-decoration-line:underline;vertical-align:baseline;white-space:pre-wrap" class="">https://git-scm.com/download/win</span></a><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">
</span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Version
control is a great tool to incorporate into your workflow that can help you to get back to previous (working) version of your work and will help you to collaborate efficiently. This group can be a great opportunity to get started.
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;white-space:pre-wrap" class="">Please let me know if you have any questions or need help to get set up!</span></div>
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<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Best,</span></div>
<div style="line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;" class=""><span style="font-family:Arial;background-color:transparent;font-variant-numeric:normal;font-variant-east-asian:normal;vertical-align:baseline;white-space:pre-wrap" class="">Julien</span></div>
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<font size="2" class="">Julien Brun, PhD</font></div>
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<font size="2" class="">Scientific Programmer</font></div>
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<font size="2" class="">National Center for Ecological Analysis and Synthesis, NCEAS, UCSB</font></div>
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<div class="">735 State St., Suite 300</div>
<div class="">Santa Barbara, CA 93101</div>
<div class="">Phone: +1-805-893-7525</div>
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